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error installation openMx version 3.6 Date: 2015/12/18 12:57 Name: Moh. Adhib Ulil Abso   <adib@ugm.ac.id> Dear all, I have some problem with installation of openmx version 3.6. When installations is performed, I found this error message: ============================================================================================= /opt/soft/tools/openmpi-1.6.5/lib/libmpi.a(dlopen.o): In function `vm_open': /home/install/compile/openmpi-1.6.5/opal/libltdl/loaders/dlopen.c:194: warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /opt/soft/tools/openmpi-1.6.5/lib/libmpi.a(plm_base_rsh_support.o): In function `setup_shell': /home/install/compile/openmpi-1.6.5/orte/mca/plm/base/plm_base_rsh_support.c:640: warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /opt/torque/lib/libtorque.a(net_common.o): In function `pbs_getaddrinfo(char const*, addrinfo*, addrinfo**)': /tmp/torque-4.2.6/src/lib/Libpbs/../Libnet/net_common.c:977: warning: Using 'getaddrinfo' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/libpthread.a(libpthread.o): In function `sem_open': (.text+0x774d): warning: the use of `mktemp' is dangerous, better use `mkstemp' /opt/soft/tools/openmpi-1.6.5/lib/libmpi.a(nidmap.o): In function `orte_util_build_daemon_nidmap': /home/install/compile/openmpi-1.6.5/orte/util/nidmap.c:267: warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /usr/bin/ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in `/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/libc.a(strcmp.o)' can not be used when making an executable; recompile with -fPIE and relink with -pie collect2: ld returned 1 exit status make: *** [openmx] Error 1 ========================================================================================== In This installation, I used this spesifications: =========================================================== CC = mpicc -openmp -O3 -I/opt/soft/libs/fftw-3.3.4/include -I/opt/soft/tools/openmpi-1.6.5/include LIB = -L/opt/soft/libs/fftw-3.3.4/lib -lfftw3 -L/opt/soft/libs/atlas-3.10.1/lib -llapack -lcblas -L/opt/soft/tools/openmpi-1.6.5/lib -statis ====================================================================== Please, if anybody can help me to solve this problem. For your information, below is my machine environment. =========================================================================== LIBRARY_PATH=/opt/soft/libs/atlas-3.10.1/lib:/opt/soft/libs/blas-1.0/lib:/opt/soft/libs/lapack-3.5.0/lib:/opt/soft/libs/fftw-3.3.4/lib ATLAS=/opt/soft/libs/atlas-3.10.1/lib/libatlas.a LD_LIBRARY_PATH=/opt/soft/tools/python-2.7.6/lib:/opt/soft/tools/openmpi-1.6.5/lib CPATH=/opt/soft/libs/fftw-3.3.4/include FFTW3_INC=/opt/soft/libs/fftw-3.3.4/include MPI_LIB=/opt/soft/tools/openmpi-1.6.5/lib PATH=/opt/soft/libs/atlas-3.10.1/include:/opt/soft/tools/python-2.7.6/bin:/opt/torque/bin:/opt/maui/bin:/opt/soft/tools/openmpi-1.6.5/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/install/bin BLAS=/opt/soft/libs/atlas-3.10.1/lib/libcblas.a LAPACK=/opt/soft/libs/atlas-3.10.1/lib/liblapack.a MPI_BIN=/opt/soft/tools/openmpi-1.6.5/bin MPI_INC=/opt/soft/tools/openmpi-1.6.5/include _LMFILES_=/opt/soft/tools/modulefiles/openmpi/1.6.5:/opt/soft/libs/modulefiles/fftw/3.3.4:/opt/soft/libs/modulefiles/lapack/3.5.0:/opt/soft/libs/modulefiles/blas/1.0:/opt/soft/libs/modulefiles/atlas/3.10.1 LOADEDMODULES=openmpi/1.6.5:fftw/3.3.4:lapack/3.5.0:blas/1.0:atlas/3.10.1 MPI_SYSCONFIG=/opt/soft/tools/openmpi-1.6.5/etc FFTW3_LIB=/opt/soft/libs/fftw-3.3.4/lib FFTW3_BIN=/opt/soft/libs/fftw-3.3.4/bin LAPACK_LIBS=/opt/soft/libs/atlas-3.10.1/lib/liblapack.a BLAS_LIBS=/opt/soft/libs/atlas-3.10.1/lib/libcblas.a MPI_HOME=/opt/soft/tools/openmpi-1.6.5 MPI_FORTRAN_MOD_DIR=/opt/soft/tools/openmpi-1.6.5/lib FFTW3_DIR=/opt/soft/libs/fftw-3.3.4 ============================================================================== Regards, Moh. Adhib Ulil Absor Gadjah Mada University, Indonesia

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