Re: NEB: how to decide the MD.Opt.criterion value ( No.1 ) |
- Date: 2021/01/30 03:42
- Name: Naoya Yamaguchi
- Hi,
You can change a part of the path not satisfying the criterion by following http://www.openmx-square.org/openmx_man3.9/node159.html And, you may need to monitor the behavior carefully.
Regards, Naoya Yamaguchi
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Re: NEB: how to decide the MD.Opt.criterion value ( No.2 ) |
- Date: 2021/02/03 16:09
- Name: Borong
- Dear Yamaguchi,
Thank you so much for your replay!
Do you mean check the NormRD value in the .DFTSCF file? As I kept checking the .cif structure file during the NEB calculation, the structures are normal and reasonable during the calculation from step1 to step560.
And what is the proper way to decide MD.Opt.criterion value? Do I need to keep the MD.Opt.criterion=1.0e-4 (Hartree/bohr) for every system?
Best regards, Borong
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Re: NEB: how to decide the MD.Opt.criterion value ( No.3 ) |
- Date: 2021/02/03 20:25
- Name: Naoya Yamaguchi
- Dear Borong,
>Do you mean check the NormRD value in the .DFTSCF file? Yes, it should be checked first. And, if the initial path is not so bad, you might solve it by increasing the number of images. I think that because it is the same situation as beads with springs, the more beads (images) are required to describe the more complicated MEP. And, according to the following, http://www.openmx-square.org/tech_notes/NEB.pdf The parallel force tends to make distances in the phase space equivalent to each other so that many beads can draw a smooth curve. However, I think that you can stop the calculation if the obtained path is good because I'm not sure if strict criterion is needed for unphysical force contributions as mentioned in the above slide.
Regards, Naoya Yamaguchi
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Re: NEB: how to decide the MD.Opt.criterion value ( No.4 ) |
- Date: 2021/02/04 19:42
- Name: Borong
- Dear Yamaguchi,
Thank you so much for your anwser!
By the way, After getting Geometry optimization of a precursor and a product, and using the precursor and product structure to do NEB calculation, I can not get a activation energy after NEB calculation, the energy of the images kept increasing from image 0 to 6.
Is increasing the number of images the only solution? Is there other solution for this problem?
Best regards, Borong
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Re: NEB: how to decide the MD.Opt.criterion value ( No.5 ) |
- Date: 2021/02/04 20:42
- Name: Naoya Yamaguchi
- Dear Borong,
>Is increasing the number of images the only solution? If the precursor and product are correct, you might solve it by giving the initial path manually in the way shown in http://www.openmx-square.org/openmx_man3.9/node159.html Or, if you know the intermediate image, you can divide the path into two to fix the image, and you can optimize the two paths and combine them.
Regards, Naoya Yamaguchi
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Re: NEB: how to decide the MD.Opt.criterion value ( No.6 ) |
- Date: 2021/02/05 10:27
- Name: Borong
- Dear Yamaguchi,
Thank you so much for your reply!
I will try to change the path to solve the problem.
Best regards, Borong
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