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Error occurs when running scf
Date: 2025/04/02 14:06
Name: Tieyuan Bian   <22117712r@connect.polyu.hk>

Hi developers,

I want to run scf using follwoing input file:

#
#      File Name     
#

System.CurrrentDirectory        ./    # default=./
System.Name                      FAPbI3
DATA.PATH                        ../../program/openmx3.9/DFT_DATA19  # default=../DFT_DATA19
level.of.stdout                  1    # default=1 (1-3)
level.of.fileout                  1    # default=1 (0-2)
HS.fileout                      on      # on|off, default=off

#
# SCF or Electronic System
#

scf.XcType                GGA-PBE    # LDA|LSDA-CA|LSDA-PW|GGA-PBE
scf.SpinPolarization        NC        # On|Off|NC
scf.SpinOrbit.Coupling      on
scf.ElectronicTemperature  300.0      # default=300 (K)
scf.energycutoff          200.0      # default=150 (Ry)
scf.maxIter                200        # default=40
scf.EigenvalueSolver      Band      # DC|GDC|Cluster|Band
scf.Kgrid                  4 4 4      # means 4x4x4
scf.Mixing.Type          rmm-diis    # Simple|Rmm-Diis|Gr-Pulay|Kerker|Rmm-Diisk
scf.Init.Mixing.Weight    0.10        # default=0.30
scf.Min.Mixing.Weight      0.001      # default=0.001
scf.Max.Mixing.Weight      0.400      # default=0.40
scf.Mixing.History          7          # default=5
scf.Mixing.StartPulay      5          # default=6
scf.criterion            1.0e-6      # default=1.0e-6 (Hartree)
#
# MD or Geometry Optimization
#

MD.Type                      Nomd        # Nomd|Opt|NVE|NVT_VS|NVT_NH
                                      # Constraint_Opt|DIIS2|Constraint_DIIS2
MD.Opt.DIIS.History          4
MD.Opt.StartDIIS            5        # default=5
MD.maxIter                100        # default=1
MD.TimeStep                1.0        # default=0.5 (fs)
MD.Opt.criterion          1.0e-4      # default=1.0e-4 (Hartree/bohr)

#
# MO output
#

MO.fileout                  off        # on|off, default=off
num.HOMOs                    2        # default=1
num.LUMOs                    2        # default=1

#
# DOS and PDOS
#

Dos.fileout                  off      # on|off, default=off
Dos.Erange              -20.0  20.0    # default = -20 20
Dos.Kgrid                1  1  1      # default = Kgrid1 Kgrid2 Kgrid3


#
# Definition of Atomic Species
#
Species.Number      5
<Definition.of.Atomic.Species
Pb  Pb8.0-s3p2d2      Pb_PBE19
N  N6.0-s2p2d1      N_PBE19
H  H6.0-s2p1      H_PBE19
I  I7.0-s3p2d2      I_PBE19
C  C6.0-s2p2d1      C_PBE19
Definition.of.Atomic.Species>

#
# Atoms
#
Atoms.Number          12
Atoms.SpeciesAndCoordinates.Unit  Ang # Ang|AU
<Atoms.SpeciesAndCoordinates          # Unit=Ang.
  1  I  2.5873500  3.3100500  3.5063500  3.50  3.50
  2  I  2.4532100  0.0000000  6.6229200  3.50  3.50
  3  I  6.1952400  3.3100500  0.4126800  3.50  3.50
  4  Pb  2.9352100  3.3100500  0.1376700  7.00  7.00
  5  C  5.7765100  0.0000000  3.6846700  2.00  2.00
  6  N  0.5289100  0.0000000  2.9961100  2.50  2.50
  7  H  5.9337300  0.0000000  4.8150900  0.50  0.50
  8  H  5.2148900  5.6807800  3.3597100  0.50  0.50
  9  H  5.2148900  0.9393200  3.3597100  0.50  0.50
10  H  1.1078000  5.7460800  3.2698600  0.50  0.50
11  H  1.1078000  0.8740300  3.2698600  0.50  0.50
12  H  0.4605900  0.0000000  1.9212800  0.50  0.50
Atoms.SpeciesAndCoordinates>
Atoms.UnitVectors.Unit            Ang #  Ang|AU
<Atoms.UnitVectors                    # unit=Ang.
      6.6534836  0.0000000  0.0000000
      0.0000000  6.6201009  0.0000000
      -0.3303000  0.0000000  6.7031029
Atoms.UnitVectors>

However, after several seconds, the program exited and showed error:

The job 471 is running on polyucmp-MZ73-LM0-000

The number of threads in each node for OpenMP parallelization is 1.


*******************************************************
*******************************************************
Welcome to OpenMX  Ver. 3.9.9                         
Copyright (C), 2002-2019, T. Ozaki                   
OpenMX comes with ABSOLUTELY NO WARRANTY.           
This is free software, and you are welcome to       
redistribute it under the constitution of the GNU-GPL.
*******************************************************
*******************************************************



<Input_std>  Your input file was normally read.
<Input_std>  The system includes 5 species and 12 atoms.

*******************************************************
                    PAO and VPS                     
*******************************************************

<SetPara_DFT>  PAOs of species Pb were normally found.
<SetPara_DFT>  PAOs of species N were normally found.
<SetPara_DFT>  PAOs of species H were normally found.
<SetPara_DFT>  PAOs of species I were normally found.
<SetPara_DFT>  PAOs of species C were normally found.
<SetPara_DFT>  VPSs of species Pb were normally found.
              Pb_PBE19.vps is j-dependent.
<SetPara_DFT>  VPSs of species N were normally found.
              N_PBE19.vps is j-dependent.
<SetPara_DFT>  VPSs of species H were normally found.
              H_PBE19.vps is j-dependent.
<SetPara_DFT>  VPSs of species I were normally found.
              I_PBE19.vps is j-dependent.
<SetPara_DFT>  VPSs of species C were normally found.
              C_PBE19.vps is j-dependent.

*******************************************************
    Fourier transform of PAO and projectors of VNL   
*******************************************************

<FT_PAO>          Fourier transform of pseudo atomic orbitals
Could not open a file /FAPbI3_rst/FAPbI3.ftpao in FT_PAO
<FT_NLP>          Fourier transform of non-local projectors
Could not open a file /FAPbI3_rst/FAPbI3.ftnlp in FT_NLP
<FT_ProExpn_VNA>  Fourier transform of VNA separable projectors
Could not open a file /FAPbI3_rst/FAPbI3.ftPEvna in FT_ProExpn_VNA
<FT_VNA>          Fourier transform of VNA potentials
Error2: Could not open a file /FAPbI3_rst/FAPbI3.ftCvna in FT_VNA
<FT_ProductPAO>  Fourier transform of product of PAOs
Could not open a file /FAPbI3_rst/FAPbI3.ftProPAO in FT_ProductPAO



Since I do not have permission wrint files in root directory. How should I modify the input file to avoid this error?
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Page: [1]

Re: Error occurs when running scf ( No.1 )
Date: 2025/04/02 15:26
Name: Tieyuan Bian  <22117712r@connect.polyu.hk>

For more information, I installed openmx@3.9 by using spack program.
メンテ
Re: Error occurs when running scf ( No.2 )
Date: 2025/04/02 18:42
Name: Naoya Yamaguchi

Hi,

You should be able to avoid the error by checking whether you have access permissions to the relevant files in the current directory, and if not, performing the calculation in your own directory.
If that doesn't work, please install the OpenMX from the source.

Regards,
Naoya Yamaguchi
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Page: [1]

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