Top Page > Browsing
Issue enabling van der Waals correction in NEB calculations
Date: 2025/10/31 08:29
Name: AY139041   <sindyjuliethr@gmail.com>

Hello everyone,
I am currently performing NEB calculations in OpenMX to evaluate diffusion barriers of an AlF3 molecule on a graphite surface. The calculations run correctly without van der Waals correction, but when I enable vdW I get an error and the NEB job stops.

Here are the main details of my setup:

OpenMX version: 3.9

Exchange-correlation: GGA-PBE

Pseudopotentials:

Al: Al7.0-s2p2d1 Al_PBE19

C: C6.0-s2p2d1 C_PBE19

F: F6.0-s2p2d1 F_PBE19

System size: 154 atoms (graphite slab + adsorbed AlF&#8323;)

Geometry optimization method: EF

SCF k-points: 5×5×1

NEB k-points: 10×10×1

Cutoff: 180 Ry

NEB setup: MD.Type = NEB, MD.NEB.Number.Images = 8,
When I enable van der Waals, for example:

scf.dftD                    on            # on|off, default=off
  version.dftD                  3            # 2|3, default=2
  DFTD3.damp                  bj            # zero|bj, default=bj
  DFTD.Unit                    AU            # Ang|AU
  DFTD.rcut_dftD            100.0            # default=100 (DFTD.Unit)
  DFTD.cncut_dftD              40            # default=40 (DFTD.Unit)
  DFTD.IntDirection        1 1 1            # default=1 1 1 (1:on 0:off)

the calculation immediately stops with an error (no results are produced).
Without the vdW keyword, the NEB calculations run normally.
My question:

Is there any known issue with enabling vdW correction during NEB calculations in OpenMX?
Do I need to:

update to a specific OpenMX version,

modify any NEB-related tags,

or adjust the force evaluation method to ensure vdW forces are included correctly?

If someone has a working NEB input example using DFT-D2 or DFT-D3, that would be extremely helpful.

I would truly appreciate any guidance.
Thank you very much.



メンテ
Page: [1]

Re: Issue enabling van der Waals correction in NEB calculations ( No.1 )
Date: 2025/10/31 15:17
Name: Naoya Yamaguchi

Hi,

The problem of the NEB not working when DFT-D3 is included has been resolved in 3.9. It may be due to another problem.
I think there is something wrong with the input file. For example, there is no room for a special k-point designation for NEB.
We recommend sharing all the part of the input file, and error messages.

Regards,
Naoya Yamaguchi
メンテ

Page: [1]

Thread Title (must) Move the thread to the top
Your Name (must)
E-Mail (must)
URL
Password (used in modification of the submitted text)
Comment (must)

   Save Cookie