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Library error for install openmx .. Date: 2006/12/14 18:16 Name: Liger Chen   <b89202066@ntu.edu.tw> Dear Sir : there is my linking library: mpicc = /opt/mpipgi/bin/mpicc CC = $(mpicc) -O3 -I/opt/pgi/linux86-64/6.1/include -I/usr/include/ -I/opt/fftw3/include LIB = -L/opt/fftw3/lib -lfftw3 -L/opt/pgi/linux86-64/6.1/lib/ -llapack -lblas -L/usr/lib/ -lg2c I tried to complied the openmx in new cluster , but there are some error : what should I do now ? thank your help .... /usr/bin/ld: skipping incompatible /usr/lib//libm.so when searching for -lm /usr/bin/ld: skipping incompatible /usr/lib//libm.a when searching for -lm /usr/bin/ld: skipping incompatible /usr/lib//libpthread.so when searching for -lpthread /usr/bin/ld: skipping incompatible /usr/lib//libpthread.a when searching for -lpthread /usr/bin/ld: skipping incompatible /usr/lib//librt.so when searching for -lrt /usr/bin/ld: skipping incompatible /usr/lib//librt.a when searching for -lrt /usr/bin/ld: skipping incompatible /usr/lib//libc.so when searching for -lc /usr/bin/ld: skipping incompatible /usr/lib//libc.a when searching for -lc /usr/bin/ld: skipping incompatible /usr/lib//libm.so when searching for -lm /usr/bin/ld: skipping incompatible /usr/lib//libm.a when searching for -lm /usr/bin/ld: skipping incompatible /usr/lib//libc.so when searching for -lc /usr/bin/ld: skipping incompatible /usr/lib//libc.a when searching for -lc /opt/pgi/linux86-64/6.1/lib//liblapack.a(dgesvd.o)(.text+0xdf): In function `dgesvd_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib//liblapack.a(dormbr.o)(.text+0x365): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib//liblapack.a(dormbr.o)(.text+0x3fd): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib//liblapack.a(dormbr.o)(.text+0x49e): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib//liblapack.a(dormbr.o)(.text+0x52d): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib//liblapack.a(dormlq.o)(.text+0x2cf): more undefined references to `ftn_str_copy' follow /opt/pgi/linux86-64/6.1/lib//liblapack.a(dlamch.o)(.text+0xb43): In function `dlamc2_': lots massage silimiar above ..

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Re: Library error for install openmx .. ( No.1 ) Date: 2006/12/17 05:17 Name: Pavel  <PBSorokin@gmail.com> Hello! I'm not sure but...try to remove last slash from paths in CC and LIB Sincerely yours, Pavel Sorokin Re: Library error for install openmx .. ( No.2 ) Date: 2006/12/17 05:32 Name: jessK Hi, The nature of these errors is obvious - linking of mixed 32-bit/64-bit objects. You should link with libg2c in /usr/lib64 directory. jk Re: Library error for install openmx .. ( No.3 ) Date: 2006/12/20 08:57 Name: Liger Chen  <b89202066@ntu.edu.tw> Hi : thank you two. I have changed that be ( use dafault library) : mpicc = /opt/mpipgi/bin/mpicc CC = $(mpicc) -I/opt/fftw3/include LIB = -L/opt/fftw3/lib -lfftw3 -llapack -lblas -lg2c the compile was not paused yet ...what should I do now, thank you again . those looks like the lapack error , but I dont know what make that error .... there are: /opt/pgi/linux86-64/6.1/lib/liblapack.a(dgesvd.o)(.text+0xdf): In function `dgesvd_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib/liblapack.a(dormbr.o)(.text+0x365): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib/liblapack.a(dormbr.o)(.text+0x3fd): In function `dormbr_': : undefined reference to `ftn_str_copy' /opt/pgi/linux86-64/6.1/lib/liblapack.a(dlamch.o)(.text+0xb56): In function `dlamc2_': : undefined reference to `fio_fmtw_init' /opt/pgi/linux86-64/6.1/lib/liblapack.a(dlamch.o)(.text+0xb6d): In function `dlamc2_': : undefined reference to `fio_sc_fmt_write' /opt/pgi/linux86-64/6.1/lib/liblapack.a(dlamch.o)(.text+0xb72): In function `dlamc2_': : undefined reference to `fio_fmtw_end' /opt/pgi/linux86-64/6.1/lib/liblapack.a(zlanhe.o)(.text+0x1b0): In function `zlanhe_': : undefined reference to `__mth_i_cdabs' /opt/pgi/linux86-64/6.1/lib/liblapack.a(zlanhe.o)(.text+0x1d1): In function `zlanhe_': : undefined reference to `__mth_i_cdabs' /opt/pgi/linux86-64/6.1/lib/liblapack.a(zlanhe.o)(.text+0x1f2): In function `zlanhe_': : undefined reference to `__mth_i_cdabs' /opt/pgi/linux86-64/6.1/lib/liblapack.a(zlanhe.o)(.text+0x213): In function `zlanhe_': : undefined reference to `__mth_i_cdabs' Re: Library error for install openmx .. ( No.4 ) Date: 2006/12/20 09:45 Name: jessK I think you have to load some libraries in /opt/pgi/linux86-64/6.1/lib/ . You can grep to find which one is needed. Another way, more appropriate way (because it is a really BAD idea to use lapack/blas from pgi distribution) is to use acml library, which is free and contains much efficient lapack/blas. jk Re: Library error for install openmx .. ( No.5 ) Date: 2007/07/12 05:26 Name: Jonathan  <Jon4389274@aol.com> Partial solution: The likely problem is that it is trying to install as 32 bit (g++ -m32 ...). I am stuck on this problem myself. Apparently, you need the 32 bit libraries (for your 64 bit machine), although I do not know where to get them. The RPM package should be libc-dev-i386 or something simmilar, but I have not been able to find it. If you have /usr/lib32 on your machine, this is probably already installed, and may not be your problem. If anyone knows where to locate this package, please post a reply! Thanks.

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